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Relinking references to Word



I submitted my thesis using convert to plain text as I had a couple of references that no matter what I did, just wouldn't appear intext correctly.  I now have to make changes to the thesis and the convert word citations to Endnote will not work.  Since submitting the thesis I have updated my Endnote to V8 - would this make a difference.  Are there any other ways you can suggest to relink the reference list which is a few hundred long.